CovidV1, an2020, Analysis, bibRecord, 000349

Genetic evolution analysis of 2019 novel coronavirus and coronavirus from other species.

Identifieur interne : 000349 ( an2020/Analysis ); précédent : 000348; suivant : 000350

Genetic evolution analysis of 2019 novel coronavirus and coronavirus from other species.

Auteurs : Chun Li [République populaire de Chine] ; Yanling Yang [République populaire de Chine] ; Linzhu Ren [République populaire de Chine]

Source :

Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases [ 1567-7257 ] ; 2020.

RBID : pubmed:32169673

Abstract

The Corona Virus Disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a Public Health Emergency of International Concern. However, so far, there are still controversies about the source of the virus and its intermediate host. Here, we found the novel coronavirus was closely related to coronaviruses derived from five wild animals, including Paguma larvata, Paradoxurus hermaphroditus, Civet, Aselliscus stoliczkanus and Rhinolophus sinicus, and was in the same branch of the phylogenetic tree. However, genome and ORF1a homology show that the virus is not the same coronavirus as the coronavirus derived from these five animals, whereas the virus has the highest homology with Bat coronavirus isolate RaTG13.

DOI: 10.1016/j.meegid.2020.104285
PubMed: 32169673

Affiliations:

Links to Exploration step

pubmed:32169673

Le document en format XML

<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genetic evolution analysis of 2019 novel coronavirus and coronavirus from other species.</title>
<author><name sortKey="Li, Chun" sort="Li, Chun" uniqKey="Li C" first="Chun" last="Li">Chun Li</name>
<affiliation wicri:level="3"><nlm:affiliation>The Chinese Peoples' Liberation Army 964 Hospital, Changchun, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>The Chinese Peoples' Liberation Army 964 Hospital, Changchun</wicri:regionArea>
<placeName><settlement type="city">Changchun</settlement>
<region type="province">Jilin</region>
<region type="groupement">Dongbei</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Yang, Yanling" sort="Yang, Yanling" uniqKey="Yang Y" first="Yanling" last="Yang">Yanling Yang</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Special Wild Economic Animals and Plants, Chinese Academy of Agricultural Sciences, Changchun 130112, China. Electronic address: m18043213639@163.com.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Institute of Special Wild Economic Animals and Plants, Chinese Academy of Agricultural Sciences, Changchun 130112</wicri:regionArea>
<placeName><settlement type="city">Changchun</settlement>
<region type="province">Jilin</region>
<region type="groupement">Dongbei</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Ren, Linzhu" sort="Ren, Linzhu" uniqKey="Ren L" first="Linzhu" last="Ren">Linzhu Ren</name>
<affiliation wicri:level="4"><nlm:affiliation>College of Animal Sciences, Jilin University, Changchun 130062, China. Electronic address: renlz@jlu.edu.cn.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Animal Sciences, Jilin University, Changchun 130062</wicri:regionArea>
<placeName><settlement type="city">Changchun</settlement>
<region type="province">Jilin</region>
<region type="groupement">Dongbei</region>
</placeName>
<orgName type="university">Université de Jilin</orgName>
<placeName><settlement type="city">Changchun</settlement>
<region type="province">Jilin</region>
</placeName>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2020">2020</date>
<idno type="RBID">pubmed:32169673</idno>
<idno type="pmid">32169673</idno>
<idno type="doi">10.1016/j.meegid.2020.104285</idno>
<idno type="wicri:Area/PubMed/Corpus">000023</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000023</idno>
<idno type="wicri:Area/PubMed/Curation">000023</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000023</idno>
<idno type="wicri:Area/PubMed/Checkpoint">000323</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000323</idno>
<idno type="wicri:Area/Ncbi/Merge">000E01</idno>
<idno type="wicri:Area/Ncbi/Curation">000E01</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000E01</idno>
<idno type="wicri:Area/Main/Merge">000351</idno>
<idno type="wicri:Area/Main/Curation">000349</idno>
<idno type="wicri:Area/Main/Exploration">000349</idno>
<idno type="wicri:Area/an2020/Extraction">000349</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Genetic evolution analysis of 2019 novel coronavirus and coronavirus from other species.</title>
<author><name sortKey="Li, Chun" sort="Li, Chun" uniqKey="Li C" first="Chun" last="Li">Chun Li</name>
<affiliation wicri:level="3"><nlm:affiliation>The Chinese Peoples' Liberation Army 964 Hospital, Changchun, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>The Chinese Peoples' Liberation Army 964 Hospital, Changchun</wicri:regionArea>
<placeName><settlement type="city">Changchun</settlement>
<region type="province">Jilin</region>
<region type="groupement">Dongbei</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Yang, Yanling" sort="Yang, Yanling" uniqKey="Yang Y" first="Yanling" last="Yang">Yanling Yang</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Special Wild Economic Animals and Plants, Chinese Academy of Agricultural Sciences, Changchun 130112, China. Electronic address: m18043213639@163.com.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Institute of Special Wild Economic Animals and Plants, Chinese Academy of Agricultural Sciences, Changchun 130112</wicri:regionArea>
<placeName><settlement type="city">Changchun</settlement>
<region type="province">Jilin</region>
<region type="groupement">Dongbei</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Ren, Linzhu" sort="Ren, Linzhu" uniqKey="Ren L" first="Linzhu" last="Ren">Linzhu Ren</name>
<affiliation wicri:level="4"><nlm:affiliation>College of Animal Sciences, Jilin University, Changchun 130062, China. Electronic address: renlz@jlu.edu.cn.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Animal Sciences, Jilin University, Changchun 130062</wicri:regionArea>
<placeName><settlement type="city">Changchun</settlement>
<region type="province">Jilin</region>
<region type="groupement">Dongbei</region>
</placeName>
<orgName type="university">Université de Jilin</orgName>
<placeName><settlement type="city">Changchun</settlement>
<region type="province">Jilin</region>
</placeName>
</affiliation>
</author>
</analytic>
<series><title level="j">Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases</title>
<idno type="eISSN">1567-7257</idno>
<imprint><date when="2020" type="published">2020</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">The Corona Virus Disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a Public Health Emergency of International Concern. However, so far, there are still controversies about the source of the virus and its intermediate host. Here, we found the novel coronavirus was closely related to coronaviruses derived from five wild animals, including Paguma larvata, Paradoxurus hermaphroditus, Civet, Aselliscus stoliczkanus and Rhinolophus sinicus, and was in the same branch of the phylogenetic tree. However, genome and ORF1a homology show that the virus is not the same coronavirus as the coronavirus derived from these five animals, whereas the virus has the highest homology with Bat coronavirus isolate RaTG13.</div>
</front>
</TEI>
<affiliations><list><country><li>République populaire de Chine</li>
</country>
<region><li>Dongbei</li>
<li>Jilin</li>
</region>
<settlement><li>Changchun</li>
</settlement>
<orgName><li>Université de Jilin</li>
</orgName>
</list>
<tree><country name="République populaire de Chine"><region name="Jilin"><name sortKey="Li, Chun" sort="Li, Chun" uniqKey="Li C" first="Chun" last="Li">Chun Li</name>
</region>
<name sortKey="Ren, Linzhu" sort="Ren, Linzhu" uniqKey="Ren L" first="Linzhu" last="Ren">Linzhu Ren</name>
<name sortKey="Yang, Yanling" sort="Yang, Yanling" uniqKey="Yang Y" first="Yanling" last="Yang">Yanling Yang</name>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Wicri/Sante/explor/CovidV1/Data/an2020/Analysis

HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000349 | SxmlIndent | more

HfdSelect -h $EXPLOR_AREA/Data/an2020/Analysis/biblio.hfd -nk 000349 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Wicri/Sante
   |area=    CovidV1
   |flux=    an2020
   |étape=   Analysis
   |type=    RBID
   |clé=     pubmed:32169673
   |texte=   Genetic evolution analysis of 2019 novel coronavirus and coronavirus from other species.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/an2020/Analysis/RBID.i   -Sk "pubmed:32169673" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/an2020/Analysis/biblio.hfd   \
       | NlmPubMed2Wicri -a CovidV1

This area was generated with Dilib version V0.6.33.
Data generation: Fri Mar 27 18:14:15 2020. Site generation: Sun Jan 31 15:15:08 2021

Serveur d'exploration Covid

Genetic evolution analysis of 2019 novel coronavirus and coronavirus from other species.

Genetic evolution analysis of 2019 novel coronavirus and coronavirus from other species.

Source :

Abstract

Links toward previous steps (curation, corpus...)

Links to Exploration step

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki

	Serveur d'exploration Covid
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.